Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FP66_03380Among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)    
Predicted Functional Partners:
FP66_14410
Competence protein ComF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.897
FP66_01380
DNA processing protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.865
FP66_00190
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.725
FP66_03375
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.720
FP66_04715
Competence protein ComEA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.607
FP66_13880
Competence protein ComEC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.599
FP66_11835
Crossover junction endodeoxyribonuclease RuvC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.590
FP66_01235
Preprotein translocase subunit SecF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.517
secD
Preprotein translocase subunit SecD; Part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.461
FP66_10590
Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.460
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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