Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP66_03390Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)    
Predicted Functional Partners:
FP66_10085
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.922
FP66_10090
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.906
FP66_12925
Acyl carrier protein; Carries the fatty acid chain in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.886
FP66_03385
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.841
FP66_05555
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.810
FP66_12225
Glycerophosphodiester phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.778
FP66_14205
Anti-sigma factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.744
FP66_00165
Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.716
FP66_03395
Malate synthase; Catalyzes the formation of malate from glyoxylate and acetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.681
FP66_14200
Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.645
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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