Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP66_04025GTPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)    
Predicted Functional Partners:
rpmD
50S ribosomal protein L30; L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.974
FP66_13380
23S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.968
FP66_01400
16S rRNA methyltransferase; Catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.965
rplJ
Binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.964
FP66_13440
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.958
FP66_06505
50S ribosomal protein L23; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.940
FP66_07325
Methionine aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.940
FP66_06535
50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.937
FP66_06520
50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.929
FP66_06735
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.896
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.