STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FP66_04060ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)    
Predicted Functional Partners:
FP66_04065
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.974
FP66_04055
Arsenic transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.528
FP66_06580
30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.505
FP66_06545
50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.481
FP66_06885
Phosphonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.464
FP66_13870
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.457
FP66_06555
50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.454
FP66_06610
30S ribosomal protein S11; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.416
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.