Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP66_04450Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)    
Predicted Functional Partners:
FP66_07025
Recombinase RecA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.947
FP66_03695
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.685
FP66_09575
DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.685
FP66_16050
DNA polymerase IV; Involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.685
FP66_00845
Exodeoxyribonuclease V subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.605
FP66_04445
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.598
FP66_10800
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.583
FP66_07250
DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.566
FP66_04455
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.543
FP66_11830
ATP-dependent DNA helicase RuvA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.521
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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