Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP66_04785Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)    
Predicted Functional Partners:
FP66_03420
tRNA (guanine-N7)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.552
FP66_13755
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.552
FP66_04775
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.551
FP66_04780
Proline racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.551
FP66_04790
Sodium:solute symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.503
FP66_10590
Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.460
FP66_06205
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.412
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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