Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
FP66_06255Lytic murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)    
Predicted Functional Partners:
FP66_06265
Penicillin-binding protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.869
FP66_06250
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.852
FP66_06245
D-alanyl-D-alanine carboxypeptidase; Penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.805
FP66_06260
Rod shape-determining protein RodA; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.791
FP66_06270
50S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.752
FP66_06275
Iojap-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.752
FP66_06240
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.683
FP66_06235
Lipoate--protein ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.653
FP66_06280
Nicotinate-nucleotide adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.646
FP66_06285
Gamma-glutamyl phosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.643
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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