Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
FP66_06355ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)    
Predicted Functional Partners:
FP66_06350
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.997
FP66_06345
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.992
FP66_06340
Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.986
FP66_02585
Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.971
FP66_04315
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.953
FP66_00585
Amino acid ABC transporter permease; With HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.877
FP66_00590
Nickel transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.866
FP66_10890
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.864
FP66_00580
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.861
FP66_10885
Nickel permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.861
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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