Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
FP66_07285Zinc metallopeptidase RseP; Catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)    
Predicted Functional Partners:
FP66_07280
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.965
FP66_07300
Farnesyl-diphosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.940
FP66_07295
Phosphatidate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.925
FP66_07290
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.872
FP66_07310
Uridylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.769
FP66_07275
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.722
FP66_07305
Ribosome-recycling factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.700
gltB
Catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.621
FP66_07985
Anti-sigma factor MucA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.611
FP66_01340
Pyrrolo-quinoline quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.588
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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