Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
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[Homology]
Score
FP66_07310Uridylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)    
Predicted Functional Partners:
FP66_07305
Ribosome-recycling factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.989
upp
Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.979
FP66_07315
Elongation factor Ts; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.972
FP66_01300
Nucleoside diphosphate kinase; Catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.970
FP66_07320
30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.952
FP66_07300
Farnesyl-diphosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.931
FP66_04710
Orotidine 5'-phosphate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.914
FP66_12740
Stationary phase survival protein SurE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.913
FP66_07295
Phosphatidate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.897
FP66_05440
LOG family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.867
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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