Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP66_0757550S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)    
Predicted Functional Partners:
rpsP
30S ribosomal protein S16; Binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
FP66_00145
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.998
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
FP66_07320
30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.998
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.998
rplU
50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
rpmA
50S ribosomal protein L27; Involved in the peptidyltransferase reaction during translation; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
FP66_06440
50S ribosomal protein L11; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
FP66_06445
50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
rplL
50S ribosomal protein L7/L12; Present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.997
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.