Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FP66_07685Polynucleotide adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)    
Predicted Functional Partners:
FP66_07695
Diadenosine tetraphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.906
FP66_07690
Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.841
FP66_13355
4-hydroxy-tetrahydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.777
FP66_14795
Methylglyoxal synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.759
FP66_07715
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.753
rpmF
Some L32 proteins have zinc finger motifs consisting of CXXC while others do not; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.708
FP66_07705
Ribosomal RNA small subunit methyltransferase A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.704
apaG
Heavy metal transporter; Protein associated with Co2+ and Mg2+ efflux; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.700
FP66_06400
biotin--acetyl-CoA-carboxylase ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.699
FP66_00175
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.690
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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