Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP66_07795Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (450 aa)    
Predicted Functional Partners:
FP66_08260
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.873
FP66_07790
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.748
FP66_07785
Murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.702
FP66_07870
Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.626
FP66_06715
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.608
FP66_09085
Nex18 symbiotically induced protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.533
FP66_12925
Acyl carrier protein; Carries the fatty acid chain in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.417
FP66_11425
Superoxide dismutase; SodA; manganese binding; only present under aerobic conditions; destroys free radicals; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.412
FP66_15235
Superoxide dismutase; SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.412
FP66_12600
Endoribonuclease YbeY; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.409
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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