STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FP66_0791030S ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)    
Predicted Functional Partners:
FP66_00150
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.999
FP66_06470
30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
FP66_06475
30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
rpsJ
30S ribosomal protein S10; NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.999
FP66_06515
30S ribosomal protein S19; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.999
FP66_06525
30S ribosomal protein S3; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.999
FP66_06540
30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.999
FP66_06560
30S ribosomal protein S14; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
FP66_06565
30S ribosomal protein S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.999
FP66_06580
30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.999
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.