Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP66_08005Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)    
Predicted Functional Partners:
FP66_08000
Elongation factor 4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.980
rnc
Ribonuclease III; Cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.930
FP66_06735
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.862
FP66_01940
DNA topoisomerase IV subunit A; Decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.846
FP66_07995
Serine peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.825
FP66_07635
Cell division topological specificity factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.824
FP66_08015
GTPase Era; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.811
FP66_10240
Competence protein ComL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.715
secY
Preprotein translocase subunit SecY; Forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.708
FP66_09975
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.706
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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