STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP66_08020DNA recombination protein RecO; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)    
Predicted Functional Partners:
recR
Recombination protein RecR; Involved in a recombinational process of DNA repair, independent of the recBC complex; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.948
FP66_08015
GTPase Era; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.868
FP66_08025
Pyridoxine 5'-phosphate synthase; Involved in the de novo synthesis of pyridoxine (Vitamin B6); Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.863
FP66_12595
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.857
rnc
Ribonuclease III; Cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.822
FP66_02970
DNA polymerase I; Has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.756
FP66_08030
ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.744
FP66_00260
Cell division protein FtsQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.738
FP66_13295
Outer membrane protein assembly protein BamE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.721
FP66_07020
Recombinase RecX; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.716
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.