STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
relA(p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; Derived by automated computational analysis using gene prediction method: Protein Homology. (759 aa)    
Predicted Functional Partners:
FP66_08055
Nucleoside triphosphate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.989
FP66_08035
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.973
FP66_02345
(p)ppGpp synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.948
FP66_01300
Nucleoside diphosphate kinase; Catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.944
FP66_07910
30S ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.930
rplU
50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.915
FP66_06505
50S ribosomal protein L23; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.913
rplX
50S ribosomal protein L24; Assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.912
FP66_06605
30S ribosomal protein S13; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.910
FP66_07235
Exopolyphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.909
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.