Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP66_08085Zinc chelation protein SecC; Derived by automated computational analysis using gene prediction method: Protein Homology. (611 aa)    
Predicted Functional Partners:
secA
Preprotein translocase subunit SecA; Functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not es [...]
   
  0.830
FP66_07615
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.766
FP66_06655
dTDP-4-dehydrorhamnose reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.758
FP66_06030
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.757
FP66_14440
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.755
FP66_03960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.751
FP66_00065
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.750
FP66_08080
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.743
FP66_11220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.743
FP66_00280
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.736
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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