Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP66_09210Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)    
Predicted Functional Partners:
FP66_12700
Aldose epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.813
FP66_09215
AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.757
FP66_09220
High potential iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.638
FP66_10355
N-methylproline demethylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.630
FP66_15065
Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.627
FP66_10085
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.619
FP66_02970
DNA polymerase I; Has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.585
FP66_07550
Single-stranded DNA exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.408
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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