Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FP66_09445Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)    
Predicted Functional Partners:
FP66_09450
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.717
FP66_12250
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.545
FP66_14440
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.539
FP66_11220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.501
FP66_05515
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.497
FP66_14035
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.469
FP66_08085
Zinc chelation protein SecC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.453
FP66_08725
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.445
FP66_04300
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.442
metG
methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.433
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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