Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FP66_09490Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology. (503 aa)    
Predicted Functional Partners:
FP66_09840
3,4-dihydroxy-2-butanone 4-phosphate synthase; Bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.630
FP66_09480
Permase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.563
FP66_09485
Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.563
FP66_14875
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.520
FP66_07720
LPS biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.500
FP66_06055
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.497
FP66_06910
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.488
FP66_07280
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.488
FP66_09070
Type I secretion protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.471
FP66_14570
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.467
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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