Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP66_10045ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)    
Predicted Functional Partners:
FP66_10040
Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
FP66_09720
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.992
FP66_10035
Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.990
FP66_10030
Spermidine/putrescine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.972
FP66_09710
Spermidine/putrescine ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.929
FP66_10055
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
0.772
FP66_02985
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.770
FP66_10025
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.700
FP66_10050
Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.700
FP66_03160
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.501
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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