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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FP66_13435Ribosome-binding factor A; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)    
Predicted Functional Partners:
FP66_13440
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.994
FP66_13430
Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.993
FP66_13445
30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.981
FP66_13420
Ribosome maturation protein RimP; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.962
FP66_06540
30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.936
FP66_06475
30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.935
FP66_06580
30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.929
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.913
FP66_06610
30S ribosomal protein S11; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.912
FP66_06615
30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.912
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.