Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FP66_14735Diaminopimelate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)    
Predicted Functional Partners:
FP66_14740
Diaminopimelate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.996
FP66_07350
Succinyl-diaminopimelate desuccinylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.974
gltB
Catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.960
FP66_01795
RNA pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.911
FP66_00220
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.907
FP66_14750
Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.883
FP66_14745
Lipopeptide LppL; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.851
FP66_13355
4-hydroxy-tetrahydrodipicolinate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.846
FP66_07010
Aspartate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.734
FP66_03540
Tyrosine recombinase XerC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.732
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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