Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP66_14980Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (650 aa)    
Predicted Functional Partners:
FP66_14975
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.659
FP66_10580
N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.546
FP66_08085
Zinc chelation protein SecC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.536
FP66_07720
LPS biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.531
FP66_09540
Murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.498
FP66_08110
Lytic murein transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.480
FP66_12755
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.472
FP66_06030
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.467
FP66_01475
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.460
FP66_07615
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.459
Your Current Organism:
Halomonas salina
NCBI taxonomy Id: 42565
Other names: ATCC 49509, CIP 106092, DSM 5928, Deleya salina, H. salina, JCM 21221, strain F8-11
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