STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M446_1237Hypothetical protein; KEGG: mag:amb1041 insertion element IS2A hypothetical 482 kDa protein. (129 aa)    
Predicted Functional Partners:
M446_0959
PFAM: transposase IS3/IS911 family protein; KEGG: ypn:YPN_3423 helix-turn-helix, fis-type.
 
  
 0.776
M446_3339
PFAM: transposase IS3/IS911 family protein; KEGG: mex:Mext_3530 transposase IS3/IS911 family protein.
 
  
 0.767
M446_1009
Transposase; KEGG: azc:AZC_1931 transposase.
  
     0.736
M446_3338
PFAM: Integrase catalytic region; KEGG: mex:Mext_3531 integrase catalytic region.
 
     0.736
M446_1010
KEGG: rsq:Rsph17025_3556 hypothetical protein.
 
  
 0.654
M446_6414
PFAM: Integrase catalytic region; KEGG: atc:AGR_L_551 hypothetical protein.
  
     0.642
M446_3901
PFAM: Cache type 2 domain protein; KEGG: bja:bll7295 hypothetical protein.
  
     0.616
M446_1238
PFAM: protein of unknown function DUF1275; KEGG: rha:RHA1_ro04188 possible membrane protein.
       0.437
Your Current Organism:
Methylobacterium sp. 446
NCBI taxonomy Id: 426117
Other names: M. sp. 4-46, Methylobacterium sp. 4-46
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