Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
M446_2300 | M446_2362 | PFAM: major facilitator superfamily MFS_1; KEGG: bpt:Bpet2649 putative transmembrane transport protein. | SMART: helix-turn-helix domain protein; KEGG: bch:Bcen2424_2428 transcriptional regulator, XRE family. | 0.408 |
M446_2361 | M446_2362 | Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mex:Mext_4752 methyltransferase type 11. | SMART: helix-turn-helix domain protein; KEGG: bch:Bcen2424_2428 transcriptional regulator, XRE family. | 0.790 |
M446_2362 | M446_2300 | SMART: helix-turn-helix domain protein; KEGG: bch:Bcen2424_2428 transcriptional regulator, XRE family. | PFAM: major facilitator superfamily MFS_1; KEGG: bpt:Bpet2649 putative transmembrane transport protein. | 0.408 |
M446_2362 | M446_2361 | SMART: helix-turn-helix domain protein; KEGG: bch:Bcen2424_2428 transcriptional regulator, XRE family. | Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mex:Mext_4752 methyltransferase type 11. | 0.790 |