STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M446_2453TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: xom:XOO_2165 RhsD protein. (1177 aa)    
Predicted Functional Partners:
M446_2450
PFAM: RHS protein; YD repeat-containing protein; KEGG: sdn:Sden_2443 YD repeat.
     0.960
M446_0887
Patatin; KEGG: acr:Acry_2063 patatin.
  
     0.604
M446_2449
Hypothetical protein.
       0.559
M446_2451
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: ret:RHE_PA00078 putative insertion sequence ATP-binding protein, IS21 family.
       0.559
M446_2452
PFAM: Integrase catalytic region; KEGG: swi:Swit_5106 integrase, catalytic region.
       0.559
M446_2875
PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; phosphopantetheine-binding; KEGG: pol:Bpro_3393 AMP-dependent synthetase and ligase.
  
   
 0.515
M446_6045
PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: scl:sce1885 hypothetical protein.
  
    0.495
M446_1078
PFAM: polysaccharide biosynthesis protein; KEGG: rle:RL4591 putative transmembrane teichuronic acid biosynthesis protein.
  
     0.479
M446_1766
KEGG: mex:Mext_4786 membrane protein involved in the export of O-antigen and teichoic acid-like protein.
  
     0.464
M446_4978
PFAM: acyltransferase 3; KEGG: bxe:Bxe_B0486 hypothetical protein.
  
     0.448
Your Current Organism:
Methylobacterium sp. 446
NCBI taxonomy Id: 426117
Other names: M. sp. 4-46, Methylobacterium sp. 4-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.