STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M446_3692PFAM: hydroxyneurosporene synthase; KEGG: mex:Mext_2725 hydroxyneurosporene synthase. (297 aa)    
Predicted Functional Partners:
M446_3693
TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mex:Mext_2726 phytoene desaturase.
 
 
 0.995
M446_3695
PFAM: O-methyltransferase family 2; Methyltransferase type 12; KEGG: mex:Mext_2728 O-methyltransferase family 2.
 
  
 0.988
M446_3734
TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mex:Mext_3011 phytoene desaturase.
 
 
 0.972
M446_5197
TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mex:Mext_3441 phytoene desaturase.
 
 
 0.943
M446_3694
PFAM: Polyprenyl synthetase; KEGG: mex:Mext_2727 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
  
 0.924
M446_3735
PFAM: Squalene/phytoene synthase; KEGG: mex:Mext_3012 squalene/phytoene synthase.
 
  
 0.870
M446_3698
TIGRFAM: chlorophyllide reductase subunit Y; PFAM: oxidoreductase/nitrogenase component 1; KEGG: mex:Mext_2731 chlorophyllide reductase subunit Y.
 
  
 0.866
M446_3699
TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase component 1; protein of unknown function DUF1197; KEGG: mex:Mext_2732 chlorophyllide reductase subunit Z.
 
  
 0.862
M446_3696
TIGRFAM: chlorophyll synthesis pathway, BchC; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: mex:Mext_2729 chlorophyll synthesis pathway, BchC.
 
  
 0.857
M446_3697
KEGG: mex:Mext_2730 chlorophyllide reductase iron protein subunit X; TIGRFAM: chlorophyllide reductase iron protein subunit X; PFAM: NifH/frxC-family protein; Belongs to the NifH/BchL/ChlL family.
 
  
 0.846
Your Current Organism:
Methylobacterium sp. 446
NCBI taxonomy Id: 426117
Other names: M. sp. 4-46, Methylobacterium sp. 4-46
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