STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M446_6092KEGG: rpe:RPE_0807 lipopolysaccharide biosynthesis. (730 aa)    
Predicted Functional Partners:
M446_2957
PFAM: polysaccharide export protein; KEGG: mex:Mext_1858 polysaccharide export protein.
 
 
 0.949
M446_4021
PFAM: polysaccharide export protein; KEGG: mes:Meso_0652 polysaccharide export protein.
 
 
 0.948
M446_1072
PFAM: polysaccharide export protein; KEGG: bja:blr6311 putative exopolysaccharide production protein.
 
 
 0.930
M446_4032
PFAM: sugar transferase; KEGG: ret:RHE_CH03328 exopolysaccharide production protein.
 
  
 0.917
M446_4990
TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: bja:blr2358 probable glycosyl transferase.
 
  
 0.916
M446_2459
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mex:Mext_1044 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
  
 0.915
M446_0455
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: mex:Mext_2037 polysaccharide biosynthesis protein CapD.
 
  
 0.909
M446_2955
Undecaprenyl-phosphate glucose phosphotransferase; KEGG: mex:Mext_1856 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.891
M446_0324
PFAM: polysaccharide export protein; KEGG: mex:Mext_2535 polysaccharide export protein.
  
 
 0.880
M446_6357
PFAM: polysaccharide export protein; KEGG: mex:Mext_2535 polysaccharide export protein.
  
 
 0.880
Your Current Organism:
Methylobacterium sp. 446
NCBI taxonomy Id: 426117
Other names: M. sp. 4-46, Methylobacterium sp. 4-46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.