STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET00739.1Uncharacterized protein YjbI, contains pentapeptide repeats. (290 aa)    
Predicted Functional Partners:
SET69487.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.625
SET17805.1
DNA gyrase subunit B.
   
 
 0.619
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
   
 
 0.619
SET36796.1
Hypothetical protein.
  
 0.563
SET46839.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.472
SET59909.1
TPR repeat-containing protein.
  
  
 0.416
SES72620.1
Uncharacterized protein, YkwD family.
  
     0.407
SES76405.1
S-layer homology domain-containing protein.
  
 
 0.407
SES99758.1
Chemotaxis protein MotB.
  
 
 0.407
Your Current Organism:
Natronincola peptidivorans
NCBI taxonomy Id: 426128
Other names: DSM 18979, N. peptidivorans, Natronincola peptidivorans corrig. Zhilina et al. 2009, Natronincola peptidovorans, VKM B-2503, strain Z-7031
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.