STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET35024.1Na+/melibiose symporter. (418 aa)    
Predicted Functional Partners:
SET35005.1
AraC-type DNA-binding protein.
 
  
 0.707
SET26920.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
   
 
  0.691
SET35043.1
Phosphoenolpyruvate synthase.
 
   
 0.611
SET11028.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.527
SET36796.1
Hypothetical protein.
     
 0.511
SET50139.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
    
 0.461
SES96388.1
Signal transduction histidine kinase.
    
 0.457
SET35064.1
Transcriptional regulator, TetR family.
     
 0.447
SET30539.1
1-acyl-sn-glycerol-3-phosphate acyltransferase.
  
  
 0.446
SET59290.1
Lysophospholipase, alpha-beta hydrolase superfamily.
  
  
 0.439
Your Current Organism:
Natronincola peptidivorans
NCBI taxonomy Id: 426128
Other names: DSM 18979, N. peptidivorans, Natronincola peptidivorans corrig. Zhilina et al. 2009, Natronincola peptidovorans, VKM B-2503, strain Z-7031
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