STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET40581.1L-fucose mutarotase; Belongs to the RbsD / FucU family. (142 aa)    
Predicted Functional Partners:
SET18598.1
Rhamnulokinase.
 
 
 0.866
SET18690.1
Rhamnose transport system substrate-binding protein.
 
   
 0.719
SET40563.1
Threonine dehydrogenase.
       0.706
SET18578.1
L-fuculose-phosphate aldolase.
 
  
 0.603
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
  
   
 0.565
SET24996.1
L-fuculose-phosphate aldolase.
 
  
 0.565
SET40535.1
Hypothetical protein.
       0.551
SET40595.1
Transcriptional regulator, LacI family.
       0.537
SET40626.1
Ribose transport system substrate-binding protein.
 
   
 0.516
SET40522.1
Threonine dehydrogenase.
       0.421
Your Current Organism:
Natronincola peptidivorans
NCBI taxonomy Id: 426128
Other names: DSM 18979, N. peptidivorans, Natronincola peptidivorans corrig. Zhilina et al. 2009, Natronincola peptidovorans, VKM B-2503, strain Z-7031
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.