STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET82683.1S-layer homology domain-containing protein. (278 aa)    
Predicted Functional Partners:
SET37802.1
Ig-like domain (group 2).
 
0.852
SET78974.1
Putative Ig domain-containing protein.
 
 0.843
SET82179.1
Cadherin-like beta sandwich domain-containing protein.
 
 
 0.808
SET80164.1
Copper amine oxidase N-terminal domain-containing protein.
 
  
 0.806
SET34525.1
Repeat domain (List_Bact_rpt).
 
 0.803
SET06146.1
Polysaccharide pyruvyl transferase CsaB.
 
     0.758
SET22251.1
S-layer homology domain-containing protein.
  
  
 0.758
SET34538.1
Listeria/Bacterioides repeat-containing protein.
  
     0.745
SES85119.1
Predicted protein.
  
    0.743
SET81606.1
Alpha-tubulin suppressor.
 
 0.741
Your Current Organism:
Natronincola peptidivorans
NCBI taxonomy Id: 426128
Other names: DSM 18979, N. peptidivorans, Natronincola peptidivorans corrig. Zhilina et al. 2009, Natronincola peptidovorans, VKM B-2503, strain Z-7031
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