STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACB25219.1PFAM: peptidase M55 D-aminopeptidase; KEGG: rfr:Rfer_3107 peptidase M55, D-aminopeptidase. (271 aa)    
Predicted Functional Partners:
ACB25220.1
PFAM: peptidase S58 DmpA; KEGG: reh:H16_A2097 D-aminopeptidase.
 
   
 0.943
ACB25221.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0137 binding-protein-dependent transport systems inner membrane component.
 
  
 0.871
ACB25222.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0138 binding-protein-dependent transport systems inner membrane component.
 
  
 0.868
ACB25226.1
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pol:Bpro_0142 transcriptional regulator, RpiR family.
 
     0.854
ACB25223.1
PFAM: extracellular solute-binding protein family 5; KEGG: pol:Bpro_0139 extracellular solute-binding protein, family 5.
 
     0.845
ACB25225.1
PFAM: peptidase T2 asparaginase 2; KEGG: pol:Bpro_0141 peptidase T2, asparaginase 2.
 
     0.586
ACB25224.1
KEGG: pol:Bpro_0140 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
   
 0.580
ACB25239.1
KEGG: rso:RS03032 putative periplasmic substrate-binding transmembrane protein.
 
     0.499
ACB25218.1
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rpa:RPA4231 putative oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.483
ACB24304.1
PFAM: cysteine dioxygenase type I; KEGG: bbr:BB1170 hypothetical protein.
  
     0.444
Your Current Organism:
Methylobacterium radiotolerans
NCBI taxonomy Id: 426355
Other names: M. radiotolerans JCM 2831, Methylobacterium radiotolerans ATCC 27329, Methylobacterium radiotolerans IAM 12098, Methylobacterium radiotolerans JCM 2831, Methylobacterium radiotolerans str. JCM 2831, Methylobacterium radiotolerans strain JCM 2831
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