STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACB25669.1PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mex:Mext_3235 methyltransferase type 12. (315 aa)    
Predicted Functional Partners:
ACB25666.1
PFAM: protein of unknown function UPF0047; KEGG: mex:Mext_3238 protein of unknown function UPF0047.
 
     0.660
ACB25670.1
PFAM: protein of unknown function DUF1275; KEGG: mex:Mext_3234 protein of unknown function DUF1275.
       0.622
ACB25667.1
PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: mex:Mext_3237 ATP dependent DNA ligase.
       0.610
ACB25668.1
KEGG: mex:Mext_3236 putative mRNA 3-end processing factor.
       0.610
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
   
    0.463
ACB27096.1
PFAM: Phytanoyl-CoA dioxygenase; KEGG: bch:Bcen2424_6285 phytanoyl-CoA dioxygenase.
  
  
 0.429
ACB25665.1
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rpa:RPA1652 possible flagellar basal-body rod protein FlgG.
       0.422
ACB24790.1
PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: mex:Mext_2751 protein of unknown function DUF882.
  
     0.404
Your Current Organism:
Methylobacterium radiotolerans
NCBI taxonomy Id: 426355
Other names: M. radiotolerans JCM 2831, Methylobacterium radiotolerans ATCC 27329, Methylobacterium radiotolerans IAM 12098, Methylobacterium radiotolerans JCM 2831, Methylobacterium radiotolerans str. JCM 2831, Methylobacterium radiotolerans strain JCM 2831
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