Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpl24eRibosomal protein L24E; Binds to the 23S rRNA. (62 aa)    
Predicted Functional Partners:
rpl19e
Ribosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.
  
 0.999
rpl40e
KEGG: mmp:MMP0151 LSU ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family.
 
 0.999
rps28e
PFAM: Ribosomal protein S28e; KEGG: mmp:MMP0640 SSU ribosomal protein S28E; Belongs to the eukaryotic ribosomal protein eS28 family.
 
 
 0.999
rpl7ae
Ribosomal protein L7Ae/L30e/S12e/Gadd45; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
 
 0.999
rps6e
PFAM: Ribosomal protein S6e; KEGG: mmp:MMP1207 ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 
 0.998
rpl18e
PFAM: ribosomal protein L15; KEGG: mmp:MMP1323 LSU ribosomal protein L18E; Belongs to the eukaryotic ribosomal protein eL18 family.
  
 0.998
rpl32e
PFAM: Ribosomal protein L32e; KEGG: mmq:MmarC5_0162 ribosomal protein L32e; Belongs to the eukaryotic ribosomal protein eL32 family.
   
 0.998
rpl3
Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
 0.998
rpl44e
Ribosomal protein L44E; Binds to the 23S rRNA.
  
 0.998
rpl31e
PFAM: Ribosomal protein L31e; KEGG: mmp:MMP0062 ribosomal protein L31e; Belongs to the eukaryotic ribosomal protein eL31 family.
  
 0.998
Your Current Organism:
Methanococcus maripaludis C7
NCBI taxonomy Id: 426368
Other names: M. maripaludis C7, Methanococcus maripaludis str. C7, Methanococcus maripaludis strain C7
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