STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRG_01526E3 ubiquitin-protein ligase NEDD4. (1205 aa)    
Predicted Functional Partners:
PTRG_06487
Thyroid hormone receptor interactor 12.
   
 
0.838
PTRG_01491
Ubiquitin.
   
  0.812
PTRG_10619
26S proteasome regulatory subunit RPN11.
    
 
 0.752
PTRG_08424
Ubiquitin-conjugating enzyme E2-16 kDa.
    
 0.675
PTRG_07963
NEDD8-activating enzyme E1 catalytic subunit.
   
 
 0.649
PTRG_00353
RING-type domain-containing protein.
   
 0.632
PTRG_02236
Autophagy-related protein 7.
     
 0.630
PTRG_01980
Ubiquitin-conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.586
PTRG_05916
Ubiquitin-conjugating enzyme E2 4.
    
 0.586
PTRG_04100
Ubiquitin conjugation factor E4.
   
 
 0.570
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.