STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRG_01572RNA methyltransferase. (651 aa)    
Predicted Functional Partners:
PTRG_11178
Uncharacterized protein.
   
 
 0.906
PTRG_04113
50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
 
 0.881
PTRG_01753
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 
 0.865
PTRG_05754
Mitochondrial ribosomal protein subunit L51.
    
   0.864
PTRG_00528
KOW domain-containing protein.
  
   0.861
PTRG_03584
tRNA modification GTPase mss1, mitochondrial.
   
 
 0.861
PTRG_01403
GTP-binding protein engB.
   
 
 0.851
PTRG_10328
TRUD domain-containing protein.
   
   0.839
PTRG_09671
Mitochondrial GTPase 1.
  
 
 0.799
PTRG_02267
60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.
   
   0.777
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
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