STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRG_01670WLM domain-containing protein. (209 aa)    
Predicted Functional Partners:
PTRG_08974
DNA damage-binding protein 1.
    
 0.928
PTRG_05501
Cullin-4B; Belongs to the cullin family.
    
 0.881
PTRG_04571
NUP50 domain-containing protein.
    
 0.821
PTRG_01791
PCI domain-containing protein.
    
  0.800
PTRG_07106
COP9 signalosome complex subunit 2.
    
  0.794
PTRG_04619
Set1 complex component swd1.
    
 0.734
PTRG_00971
RING-box protein 1.
    
 0.726
PTRG_07574
COP9 signalosome complex subunit 4.
    
  0.725
PTRG_09772
COP9 signalosome complex subunit 5.
    
  0.725
PTRG_07081
COP9 signalosome subunit 1.
    
 0.723
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
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