STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRG_00240Cysteine dioxygenase. (208 aa)    
Predicted Functional Partners:
PTRG_11142
Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
   
 
 0.886
PTRG_06435
Glutamate decarboxylase 1.
     
 0.882
PTRG_07627
Cystathionine gamma-lyase.
     
 0.852
PTRG_11258
Cystathionine beta-lyase.
     
 0.852
PTRG_07973
Cysteine synthase 2 (O-acetylserine (Thiol)-lyase 2).
   
 
 0.837
PTRG_11001
Cysteine synthase (O-acetylserine (Thiol)-lyase).
   
 
 0.837
PTRG_03645
O-acetylhomoserine (Thiol)-lyase.
     
 0.829
PTRG_06148
Glutamate decarboxylase 2.
     
 0.816
PTRG_10535
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
     
 0.816
PTRG_06083
Aspartate aminotransferase.
     
 0.814
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.