STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRG_02715Small nucleolar ribonucleoprotein complex subunit. (618 aa)    
Predicted Functional Partners:
PTRG_00069
WD repeat containing protein 57.
  
 0.999
PTRG_02571
Nucleolar protein 5A.
   
 0.999
PTRG_06328
Nucleolar protein 5A.
   
 0.999
PTRG_07440
WD_REPEATS_REGION domain-containing protein.
   
 0.999
PTRG_10071
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.999
PTRG_10447
rRNA 2'-O-methyltransferase fibrillarin.
   
 0.999
PTRG_03213
U3 small nucleolar RNA-associated protein 22.
   
 0.998
PTRG_02779
Small nucleolar ribonucleoprotein complex subunit.
  
 
 0.998
PTRG_07579
Nucleolar complex protein 4.
   
 
 0.998
PTRG_08481
WD domain containing protein.
   
 0.998
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.