STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRG_02845NEDD8-specific protease 2. (263 aa)    
Predicted Functional Partners:
PTRG_11523
Neural cell expressed.
    
 0.998
PTRG_03365
Aconitate hydratase, mitochondrial.
  
 
 0.884
PTRG_04404
Aconitate hydratase, mitochondrial.
  
 
 0.884
PTRG_03725
Homoaconitase, mitochondrial; Catalyzes the reversible hydration of cis-homoaconitate to (2R,3S)-homoisocitrate, a step in the alpha-aminoadipate pathway for lysine biosynthesis.
  
 
 0.884
PTRG_07573
54S ribosomal protein L49, mitochondrial.
  
 
 0.884
PTRG_05570
Phosphatidylinositol glycan class L.
    
 0.859
PTRG_07963
NEDD8-activating enzyme E1 catalytic subunit.
     
 0.832
PTRG_08825
NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-ULA1 E1 enzyme.
     
 0.790
PTRG_00907
CIA30 family protein.
    
 0.737
PTRG_00938
BZIP domain-containing protein.
    
 0.737
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
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