STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRG_02909Uncharacterized protein. (478 aa)    
Predicted Functional Partners:
PTRG_05579
Geranylgeranyl transferase type 2 subunit alpha.
    
 0.971
PTRG_04384
Uncharacterized protein.
    
 0.937
PTRG_03728
GTP-binding protein ypt1.
    
 0.831
PTRG_08235
Synaptobrevin; Belongs to the synaptobrevin family.
    
 
 0.794
PTRG_05776
GTP-binding protein yptV5.
    
 0.777
PTRG_03498
GTP-binding protein yptV1.
    
 0.776
PTRG_08157
Uncharacterized protein.
    
 0.772
PTRG_08158
GTP-binding protein SAS1.
    
 0.772
PTRG_03607
GTP-binding protein ypt4.
    
 0.749
PTRG_05724
Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.
   
 0.700
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
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