PTRG_03451 protein (Pyrenophora triticirepentis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PTRG_03451

Uncharacterized protein. (743 aa)

Predicted Functional Partners:

PTRG_04139

0.643

PTRG_08682

0.643

PTRG_11401

0.641

PTRG_05651

0.611

vps10

0.556

PTRG_07210

0.552

PTRG_08791

0.552

PTRG_03563

0.546

PTRG_03004

0.484

PTRG_00572

0.483

Your Current Organism:

Pyrenophora triticirepentis

NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PTRG_00572	PTRG_03004	B2VQM1	B2W014	Uncharacterized protein.	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	0.638
PTRG_00572	PTRG_03451	B2VQM1	B2W203	Uncharacterized protein.	Uncharacterized protein.	0.483
PTRG_00572	PTRG_03563	B2VQM1	B2W2B5	Uncharacterized protein.	Uncharacterized protein.	0.641
PTRG_00572	PTRG_05651	B2VQM1	B2W763	Uncharacterized protein.	Synaptobrevin.	0.650
PTRG_00572	PTRG_07210	B2VQM1	B2WA97	Uncharacterized protein.	ANTH domain containing protein.	0.625
PTRG_00572	PTRG_08791	B2VQM1	B2WFT5	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.795
PTRG_00572	vps10	B2VQM1	B2WDP9	Uncharacterized protein.	Vacuolar protein sorting/targeting protein 10; Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A. Executes multiple rounds of sorting by cycling between the late Golgi and a prevacuolar endosome-like compartment (By similarity); Belongs to the VPS10-related sortilin family.	0.462
PTRG_03004	PTRG_00572	B2W014	B2VQM1	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	Uncharacterized protein.	0.638
PTRG_03004	PTRG_03451	B2W014	B2W203	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	Uncharacterized protein.	0.484
PTRG_03004	PTRG_03563	B2W014	B2W2B5	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	Uncharacterized protein.	0.680
PTRG_03004	PTRG_05651	B2W014	B2W763	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	Synaptobrevin.	0.786
PTRG_03004	PTRG_07210	B2W014	B2WA97	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	ANTH domain containing protein.	0.769
PTRG_03004	PTRG_08791	B2W014	B2WFT5	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.910
PTRG_03004	vps10	B2W014	B2WDP9	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	Vacuolar protein sorting/targeting protein 10; Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A. Executes multiple rounds of sorting by cycling between the late Golgi and a prevacuolar endosome-like compartment (By similarity); Belongs to the VPS10-related sortilin family.	0.674
PTRG_03451	PTRG_00572	B2W203	B2VQM1	Uncharacterized protein.	Uncharacterized protein.	0.483
PTRG_03451	PTRG_03004	B2W203	B2W014	Uncharacterized protein.	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	0.484
PTRG_03451	PTRG_03563	B2W203	B2W2B5	Uncharacterized protein.	Uncharacterized protein.	0.546
PTRG_03451	PTRG_04139	B2W203	B2W104	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.643
PTRG_03451	PTRG_05651	B2W203	B2W763	Uncharacterized protein.	Synaptobrevin.	0.611
PTRG_03451	PTRG_07210	B2W203	B2WA97	Uncharacterized protein.	ANTH domain containing protein.	0.552