STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRG_04450DUF1716 domain-containing protein. (628 aa)    
Predicted Functional Partners:
PTRG_00930
Pre-mRNA-splicing factor prp46.
   
 0.998
PTRG_09366
Pre-mRNA-splicing factor cwc15.
    
 0.998
PTRG_05762
Ubiquitin-protein ligase E4.
   
 0.995
PTRG_02593
Uncharacterized protein.
   
 0.993
PTRG_00759
Pre-mRNA-splicing factor cef1.
   
 0.964
PTRG_02372
Isochorismatase hydrolase.
   
 0.964
PTRG_01172
Cell cycle control protein cwf14.
   
 
 0.905
PTRG_00218
Pre-mRNA-processing protein 45.
   
 
 0.903
PTRG_08981
Pre-mRNA-splicing factor syf1.
   
 
 0.896
PTRG_00441
Splicing factor 3a subunit 2.
   
   0.860
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.