STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRG_05494XPGI domain-containing protein. (782 aa)    
Predicted Functional Partners:
PTRG_02816
3'-5' exonuclease domain-containing protein.
   
 0.922
PTRG_03054
HRDC domain-containing protein.
   
 0.922
PTRG_08060
Vezatin domain-containing protein.
   
 0.920
PTRG_00585
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
   
 0.854
PTRG_02984
DNA polymerase subunit delta-2.
   
 0.820
PTRG_11026
TFIIH basal transcription factor complex helicase XPB subunit.
    
 0.817
PTRG_01446
RNA polymerase II transcription factor.
    
 0.796
PTRG_05712
DNA repair endonuclease XPF.
   
 0.791
PTRG_06908
DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family.
   
 
 0.752
PTRG_04512
DNA repair protein rad50.
  
 0.748
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
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