STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRG_05915RNase_PH domain-containing protein. (243 aa)    
Predicted Functional Partners:
PTRG_00114
Exosome component 2.
   
 0.999
PTRG_05382
3' exoribonuclease family protein.
   
 0.999
PTRG_07354
Exosome complex exonuclease RRP40.
  
 0.999
PTRG_09367
3' exoribonuclease.
   
 0.999
PTRG_10300
Exosome complex exonuclease RRP41.
   
 0.999
PTRG_00436
Ribonuclease R; Belongs to the RNR ribonuclease family.
   
 0.997
PTRG_00780
RNase_PH domain-containing protein.
  
 0.997
PTRG_05845
Exosome component 1.
   
 0.997
PTRG_07400
Exosome-associated family protein.
   
 0.997
PTRG_08836
3' exoribonuclease family protein.
   
 0.997
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.