STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRG_06454Chromatin structure-remodeling complex protein rsc1. (852 aa)    
Predicted Functional Partners:
PTRG_05109
Phasmid Socket Absent family protein.
   
 0.977
PTRG_01137
SNF2 family ATP-dependent chromatin-remodeling factor snf21.
   
0.975
PTRG_01755
SWI-SNF complex subunit.
    
 0.974
PTRG_01457
SWI-SNF complex subunit (BAF60b).
    
 0.973
PTRG_06443
Actin; Belongs to the actin family.
   
 0.973
PTRG_00672
Uncharacterized protein.
    
 0.970
PTRG_02932
Uncharacterized protein.
   
 0.970
PTRG_08496
Uncharacterized protein; Belongs to the actin family.
  
 
 0.967
PTRG_08411
Nuclear localization protein.
    
 0.959
PTRG_01487
RSC complex subunit Rsc9.
   
 
 0.941
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.