STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRG_08418AZUL domain-containing protein. (789 aa)    
Predicted Functional Partners:
PTRG_07868
Endoplasmic reticulum and nuclear membrane protein Npl4.
   
 0.978
PTRG_08781
UBX domain-containing protein 7.
    
 0.969
PTRG_01491
Ubiquitin.
   
 0.937
PTRG_02103
Phospholipase A-2-activating protein.
   
 
 0.920
PTRG_04100
Ubiquitin conjugation factor E4.
    
 
 0.920
PTRG_06455
OTU domain-containing protein.
   
 
 0.919
PTRG_10347
UBX domain containing protein.
    
 
 0.914
PTRG_06487
Thyroid hormone receptor interactor 12.
     
 0.893
PTRG_02660
Uncharacterized protein.
    
 
 0.878
PTRG_07923
26S proteasome non-ATPase regulatory subunit 4.
   
 
 0.834
Your Current Organism:
Pyrenophora triticirepentis
NCBI taxonomy Id: 426418
Other names: P. tritici-repentis Pt-1C-BFP, Pyrenophora tritici-repentis Pt-1C-BFP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.